Protocols and SOPs

Published protocol

The GETCampy protocol paper is published in BMJ Open:

Protocols for genomic epidemiology and source attribution of enteric bacteria causing diarrhoeal disease across Africa

GETCampy protocols.io collections

Additional shared protocols

The following resources can be linked here as they become available:

• participant recruitment and consent procedures;
• human stool and rectal swab sampling;
• household member sampling;
• livestock and poultry sampling;
• water and environmental sampling;
• Campylobacter culture and identification;
• DNA extraction and sequencing;
• shotgun metagenomics;
• metadata standards and data dictionaries;
• sample shipment and storage;
• data management plans.